![[Toho University]](image/CLogo_Kihon_process.jpg "[Toho University]")
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ノート/ハックメモhttp://pepper.is.sci.toho-u.ac.jp/pepper/index.php?%A5%CE%A1%BC%A5%C8%2F%A5%CF%A5%C3%A5%AF%A5%E1%A5%E2 |
![[YYLAB]](image/yamanouc2.png "[YYLAB]")
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ノート/ハックメモhttp://pepper.is.sci.toho-u.ac.jp/pepper/index.php?%A5%CE%A1%BC%A5%C8%2F%A5%CF%A5%C3%A5%AF%A5%E1%A5%E2 |
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ノート
マイニング
├マイニング
├バスケット解析
├バスケット解析をＲで
├図書貸出をＲで
├モデルクラスタリング
└
テキストマイニング
├テキストマイニングTM
├TMとシソーラス
├PubMedをTM
├TMとMeSH
├TMとNLTK
├テキストマイニングとtagger
├医薬品添付文書ＤＢ
├論文の処理1
├剽窃１
├Bing検索
└
分子進化学
├分子進化学
└
Pythonと論文アクセス
├Pythonを使ってみる
├PythonでPubMed
├Pythonで...続き
└
CUDA
├GPU
├ProgrammingGuide
├Selandメモ
├数値積分
└
ACS、PHPからLDAP
├ACS導入
├新規ホスト移行
├再度やり直し
├OpenLDAP導入
└
Linuxでビデオ
├Linuxでビデオデータを作る
├AVIフォーマット
├x264ソースを見る
├Macでフレーム抜き
└
MPIと並列化
├並列処理の実用化
├Fedora10でMPICH2
├EPMRを見る
├EPMRを見る２
├EPMRを見る〜Ｃ＋＋２
├EPMRを見る〜Ｃ＋＋２
├EPMRを見る〜Ｃ＋＋３
├EPMRを見る〜Ｃ＋＋４
├CASP7と日本人
└
Macメモ
├Script
自信ないので
├Winのバッチ
│├スクリプト入門
│├バッチファイル
│├SETコマンド
│├自分のメモ
│└
└
訪問者数 307 最終更新 2018-12-07 (金) 13:40:45
＞＞2017年の分 （このページの前）
ムキムキで疲れにくい体ができる？らくらくできる体幹トレーニングがこれｗｗｗ
健康にいい、適度な運動量ってどのくらい？ Physical activity guidelines for adults (UK National Health Service)
たとえばQuickGoで、oxygen transportを検索→TermsとGene productsに分かれて出てくる。
Terms中で、P (Biological Process) と F (Molecular Function) と C (Cellular Component) のマークが付いているので、それぞれのいくつかを選択（評価値があるのではないか？）。
それぞれのGOの先を見る。
[Term] id: GO:0000001 name: mitochondrion inheritance namespace: biological_process def: "The distribution of mitochondria, including the mitochondrial genome, into daughter cells after mitosis or meiosis, mediated by interactions between mitochondria and the cytoskeleton." [GOC:mcc, PMID:10873824, PMID:11389764] synonym: "mitochondrial inheritance" EXACT [] is_a: GO:0048308 ! organelle inheritance is_a: GO:0048311 ! mitochondrion distribution
<dbReference type="GO" id="GO:0009088"> <property type="term" value="P:threonine biosynthetic process"/> <property type="evidence" value="ECO:0000501"/> <property type="project" value="UniProtKB-UniRule"/> </dbReference> <dbReference type="GO" id="GO:0031556"> <property type="term" value="P:transcriptional attenuation by ribosome"/> <property type="evidence" value="ECO:0000501"/> <property type="project" value="UniProtKB-UniRule"/> </dbReference>
{"numberOfHits":1,"results": [{"id":"GO:0009088","isObsolete":false,
"name":"threonine biosynthetic process",
"definition":{"text":"The chemical reactions and pathways resulting in the formation of threonine (2-amino-3-hydroxybutyric acid),
a polar, uncharged, essential amino acid found in peptide linkage in proteins.",
"xrefs": [{"dbCode":"ISBN","dbId":"0198506732"}]},
"synonyms":[{"name":"threonine formation","type":"exact"},{"name":"threonine synthesis","type":"exact"},
{"name":"threonine anabolism","type":"exact"},{"name":"threonine biosynthesis","type":"exact"}],
"aspect":"biological_process","usage":"Unrestricted"}],"pageInfo":null}
{"numberOfHits":1,"results": [{"id":"GO:0031556","isObsolete":false,
"name":"transcriptional attenuation by ribosome",
"definition":{"text":"A type of transcriptional regulation at the level of early termination.
This process can occur only in prokaryotes, where transcription of an operon into messenger RNA
and translation of that mRNA into polypeptides occur simultaneously. The general principle is
that alternative mRNA secondary structures occur under different physiological conditions such as
available amount of a particular amino acid. One set of conditions favors early termination of
transcription. In the classic example of the trp biosynthesis operon, translation of the gene for
a short, trp-containing polypeptide called the trp operon leader peptide pauses either at a trp codon
(if tryptophan is scarce) or the stop codon (if trp is readily available). In the former situation
transcription continues, but in the latter a Rho-independent terminator forms and reduces,
or attenuates, expression of the tryptophan biosynthesis genes. Although the polypeptides
encoded by leader peptide genes appear not to be stable once their translation is complete,
it is suggested by recent studies that their nascent polypeptide chains interact specifically with
ribosomes, specific uncharged tRNAs, or other cellular components to inhibit release at the stop
codon and improve the function of transcriptional attenuation as a regulatory switch.",
"xrefs":[{"dbCode":"ISBN","dbId":"0198542682"}]},
"synonyms":[{"name":"ribosome-mediated transcriptional attenuation","type":"exact"}],
"aspect":"biological_process","usage":"Unrestricted"}],"pageInfo":null}{"numberOfHits":1,"results":
[{"id":"GO:0005829","isObsolete":false,"name":"cytosol","definition":{"text":"The part of
the cytoplasm that does not contain organelles but which does contain other particulate
matter, such as protein complexes."},
"ancestors":["GO:0005623","GO:0005737","GO:0005829","GO:0044464",
"GO:0044444","GO:0044424","GO:0005575","GO:0005622"],
"children":[{"id":"GO:0099510","relation":"occurs_in"},
{"id":"GO:0044445","relation":"part_of"},{"id":"GO:0061502","relation":"occurs_in"},
{"id":"GO:0099522","relation":"part_of"},{"id":"GO:0045249","relation":"part_of"},
{"id":"GO:1904962","relation":"occurs_in"},{"id":"GO:0045243","relation":"part_of"},
{"id":"GO:0061475","relation":"occurs_in"},{"id":"GO:0042147","relation":"occurs_in"},
{"id":"GO:0090119","relation":"occurs_in"},{"id":"GO:0045248","relation":"part_of"},
{"id":"GO:0016482","relation":"occurs_in"},{"id":"GO:0099523","relation":"part_of"},
{"id":"GO:0099524","relation":"part_of"},{"id":"GO:0033576","relation":"occurs_in"},
{"id":"GO:0045250","relation":"part_of"},{"id":"GO:0006895","relation":"occurs_in"},
{"id":"GO:0002186","relation":"part_of"},{"id":"GO:0022626","relation":"part_of"},
{"id":"GO:0061725","relation":"occurs_in"},{"id":"GO:0090160","relation":"occurs_in"},
{"id":"GO:1901950","relation":"occurs_in"},{"id":"GO:0045022","relation":"occurs_in"},{"id":"GO:0002184","relation":"occurs_in"},
{"id":"GO:0099522","relation":"is_a"},{"id":"GO:0033582","relation":"occurs_in"}],
"aspect":"cellular_component","usage":"Unrestricted"}],"pageInfo":null}import matplotlib matplotlib.matplotlib_fname()とすると、WinPythonのインストールディレクトリ下のpython-3.6.6\lib\site-packages\matplotlib\mpl-data\matplotlibrc があることが分かったので、
font.family : IPAexGothic
rem MeCab environment set MECABRC=%WINPYDIR%\..\MeCab\etc\mecabrc set MECAB_PATH=%WINPYDIR%\..\MeCab\bin\libmecabdll set PATH=%WINPYDIR%\..\MeCab\bin\;%PATH%
from natto import MeCab nm = MeCab() text = 'すもももももももものうち' print(nm.parse(text))
| 潜在変数 | |||
| 連続 | 質的 | ||
| 観測 変数 | 連続 | 因子分析 | 潜在プロフィール分析 |
| 質的 | 項目反応理論 | 潜在クラス分析 | |
%matplotlib inline
import seaborn as sns
sns.set()
df = sns.load_dataset("iris")
sns.pairplot(df, hue="species")CREATE TABLE [talbe] SELECT [fields] FROM [tables]
select id, ABC, count(*) from tablename group by id, ABC
create table newtablename select id, entyear, gakka, count(case when ABC='A' then 1 else null end) as 'A', count(case when ABC='B' then 1 else null end) as 'B', count(case when ABC='C' then 1 else null end) as 'C' from tablename group by id;
Dictionary of Protein Sites and Patterns Release 2018_05, May 18 Swiss Institute of Bioinformatics 2,525 entries Protein families database of alignments and HMMs Release 31.0, Mar 17 The Pfam Consortium 16,479 entries NCBI Conserved Domain Database Release 3.16, Apr 17 National Center for Biotechnology Information 50,369 entries
\([^\)]*\) または \(.*?\)
2018-05-01 覆された常識、CSVファイルでウイルス感染 記事に曰く
CSVファイルに書かれている内容が単なるテキストなら、それを表示するだけなので害はない。だが、関数などが記述されていると、Excelはそれを読み込んで解釈し、その内容に従って動作する。コマンド（プログラム）を実行する関数を記述することもできる。
var jsonData = $.ajax({
url: "getData.php", <--- これで済むところがミソか。
dataType: "json",
async: false
}).responseText;
// Create our data table out of JSON data loaded from server.
var data = new google.visualization.DataTable(jsonData);
として取り込む。あとはグラフを描くだけ。送り出し側は、たとえばPHPで書けば<?php
// This is just an example of reading server side data and sending it to the client.
// It reads a json formatted text file and outputs it.
$string = file_get_contents("sampleData.json");
echo $string;
// Instead you can query your database and parse into JSON etc etc
?>
で、つまりCGIとしてjsonデータを送りだせばよいらしい。まずextensions configuratorを導入 pip install jupyter_nbextensions_configurator jupyter nbextensions_configurator enable --user その上で、nbextensionがいっぱい入ったパックをインストール pip install https://github.com/ipython-contrib/jupyter_contrib_nbextensions/tarball/master jupyter contrib nbextension install --user
